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Analysis In Progress
Clinical

Dataset with samples from Individuals with Combined immunodeficiencies with associated or syndrome features:

1)- Hyper-IgE syndromes (HIES):

- AD-HIES (Job or Buckley Syndrome), Phenotype OMIM number 147060.

see PID classification: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659841/

Purpose

Hyper IgE Recurrent Infection Syndrome (HIES or Job’s syndrome), is a rare disorder of immunity and connective tissue, typically manifest with boils, cyst-forming pneumonias, and extremely elevated serum IgE as well as retained primary dentition and bone abnormalities. Inheritance can be autosomal dominant.In order to identify a specific defect or gene of interest, we performed microarray expression analysis on samples from patients with Job's syndrome and from healthy control subjects.Keywords: time course

Hypothesis

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Experimental Design

Polymorphonuclear leukocytes (PMNs) and peripheral blood mononuclear cells (PBMCs) were isolated from whole blood from patients with Job's syndrome and healthy control subjects. PMNs and PBMCs were incubated with or without IgG- and C3bi-coated latex beads for 3 and 6 hours.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
141 Samples Loaded: 141
Neutrophils , PBMC
Hyper IgE Recurrent Infection Syndrome
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title group
GSM211011 PMN_control_0min_Patient1 PMN Ctrl 0min
GSM211012 PMN_control_0min_Patient2 PMN Ctrl 0min
GSM211013 PMN_control_0min_Patient3 PMN Ctrl 0min
GSM211014 PMN_control_0min_Patient4 PMN Ctrl 0min
GSM211015 PMN_control_0min_Patient5 PMN Ctrl 0min
Please log in in order to upload files.
File
sampleset4000047_sampleannotations_Group.csv
Sample Set Spreadsheet
sampleset4000047_sampleannotations_Group.csv
Sample Set Spreadsheet
sampleset4000047_sampleannotations_Group.csv
Sample Set Spreadsheet
sampleset4000047_sampleannotations_Group.csv
Sample Set Spreadsheet
Raw Signal
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Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Group
GSM211011
PMN_control_0min_Patient1
PMN Ctrl 0min
GSM211012
PMN_control_0min_Patient2
PMN Ctrl 0min
GSM211013
PMN_control_0min_Patient3
PMN Ctrl 0min
GSM211014
PMN_control_0min_Patient4
PMN Ctrl 0min
GSM211015
PMN_control_0min_Patient5
PMN Ctrl 0min
GSM211016
PMN_LB_180min_Patient1
PMN LB 180min
GSM211017
PMN_LB_180min_Patient2
PMN LB 180min
GSM211018
PMN_LB_180min_Patient3
PMN LB 180min
GSM211019
PMN_LB_180min_Patient4
PMN LB 180min
GSM211020
PMN_LB_180min_Patient5
PMN LB 180min
GSM211021
PMN_control_180min_Patient1
PMN Ctrl 180min
GSM211022
PMN_control_180min_Patient2
PMN Ctrl 180min
GSM211023
PMN_control_180min_Patient3
PMN Ctrl 180min
GSM211024
PMN_control_180min_Patient4
PMN Ctrl 180min
GSM211025
PMN_control_180min_Patient5
PMN Ctrl 180min
GSM211026
PMN_LB_360min_Patient1
PMN LB 360min
GSM211027
PMN_LB_360min_Patient2
PMN LB 360min
GSM211028
PMN_LB_360min_Patient3
PMN LB 360min
GSM211029
PMN_LB_360min_Patient4
PMN LB 360min
GSM211030
PMN_LB_360min_Patient5
PMN LB 360min
GSM211031
PMN_control_360min_Patient1
PMN Ctrl 360min
GSM211032
PMN_control_360min_Patient2
PMN Ctrl 360min
GSM211033
PMN_control_360min_Patient3
PMN Ctrl 360min
GSM211034
PMN_control_360min_Patient4
PMN Ctrl 360min
GSM211035
PMN_control_360min_Patient5
PMN Ctrl 360min
GSM211036
PMN_control_0min_Patient6
PMN Ctrl 0min
GSM211037
PMN_control_0min_Patient7
PMN Ctrl 0min
GSM211038
PMN_control_0min_Patient8
PMN Ctrl 0min
GSM211039
PMN_control_0min_Patient9
PMN Ctrl 0min
GSM211040
PMN_control_0min_Patient10
PMN Ctrl 0min
GSM211041
PMN_LB_180min_Patient6
PMN LB 180min
GSM211042
PMN_LB_180min_Patient7
PMN LB 180min
GSM211043
PMN_LB_180min_Patient8
PMN LB 180min
GSM211044
PMN_LB_180min_Patient9
PMN LB 180min
GSM211045
PMN_LB_180min_Patient10
PMN LB 180min
GSM211046
PMN_control_180min_Patient6
PMN Ctrl 180min
GSM211047
PMN_control_180min_Patient7
PMN Ctrl 180min
GSM211048
PMN_control_180min_Patient8
PMN Ctrl 180min
GSM211049
PMN_control_180min_Patient9
PMN Ctrl 180min
GSM211050
PMN_control_180min_Patient10
PMN Ctrl 180min
GSM211051
PMN_LB_360min_Patient6
PMN LB 360min
GSM211052
PMN_LB_360min_Patient7
PMN LB 360min
GSM211053
PMN_LB_360min_Patient8
PMN LB 360min
GSM211054
PMN_LB_360min_Patient9
PMN LB 360min
GSM211055
PMN_LB_360min_Patient10
PMN LB 360min
GSM211056
PMN_control_360min_Patient6
PMN Ctrl 360min
GSM211057
PMN_control_360min_Patient7
PMN Ctrl 360min
GSM211058
PMN_control_360min_Patient8
PMN Ctrl 360min
GSM211059
PMN_control_360min_Patient9
PMN Ctrl 360min
GSM211060
PMN_control_360min_Patient10
PMN Ctrl 360min
GSM211061
PMN_control_0min_Patient11
PMN Ctrl 0min
GSM211062
PMN_control_0min_Patient12
PMN Ctrl 0min
GSM211063
PMN_control_0min_Patient13
PMN Ctrl 0min
GSM211064
PMN_control_0min_Patient14
PMN Ctrl 0min
GSM211065
PMN_LB_180min_Patient11
PMN LB 180min
GSM211066
PMN_LB_180min_Patient12
PMN LB 180min
GSM211067
PMN_LB_180min_Patient13
PMN LB 180min
GSM211068
PMN_LB_180min_Patient14
PMN LB 180min
GSM211069
PMN_control_180min_Patient11
PMN Ctrl 180min
GSM211070
PMN_control_180min_Patient12
PMN Ctrl 180min
GSM211071
PMN_control_180min_Patient13
PMN Ctrl 180min
GSM211072
PMN_control_180min_Patient14
PMN Ctrl 180min
GSM211073
PMN_LB_360min_Patient11
PMN LB 360min
GSM211074
PMN_LB_360min_Patient12
PMN LB 360min
GSM211075
PMN_LB_360min_Patient13
PMN LB 360min
GSM211076
PMN_LB_360min_Patient14
PMN LB 360min
GSM211077
PMN_control_360min_Patient11
PMN Ctrl 360min
GSM211078
PMN_control_360min_Patient12
PMN Ctrl 360min
GSM211079
PMN_control_360min_Patient13
PMN Ctrl 360min
GSM211080
PMN_control_360min_Patient14
PMN Ctrl 360min
GSM211081
PMN_control_0min_Patient15
PMN Ctrl 0min
GSM211082
PMN_control_0min_Patient16
PMN Ctrl 0min
GSM211083
PMN_control_0min_Patient17
PMN Ctrl 0min
GSM211084
PMN_control_0min_Patient18
PMN Ctrl 0min
GSM211085
PMN_LB_180min_Patient15
PMN LB 180min
GSM211086
PMN_LB_180min_Patient16
PMN LB 180min
GSM211087
PMN_LB_180min_Patient17
PMN LB 180min
GSM211088
PMN_LB_180min_Patient18
PMN LB 180min
GSM211089
PMN_control_180min_Patient15
PMN Ctrl 180min
GSM211090
PMN_control_180min_Patient16
PMN Ctrl 180min
GSM211091
PMN_control_180min_Patient17
PMN Ctrl 180min
GSM211092
PMN_control_180min_Patient18
PMN Ctrl 180min
GSM211093
PMN_LB_360min_Patient15
PMN LB 360min
GSM211094
PMN_LB_360min_Patient16
PMN LB 360min
GSM211095
PMN_LB_360min_Patient17
PMN LB 360min
GSM211096
PMN_LB_360min_Patient18
PMN LB 360min
GSM211097
PMN_control_360min_Patient15
PMN Ctrl 360min
GSM211098
PMN_control_360min_Patient16
PMN Ctrl 360min
GSM211099
PMN_control_360min_Patient17
PMN Ctrl 360min
GSM211100
PMN_control_360min_Patient18
PMN Ctrl 360min
GSM211101
MO_control_0min_Patient1
PBMC Ctrl 0min
GSM211102
MO_control_0min_Patient2
PBMC Ctrl 0min
GSM211103
MO_control_0min_Patient3
PBMC Ctrl 0min
GSM211104
MO_control_0min_Patient4
PBMC Ctrl 0min
GSM211105
MO_control_0min_Patient5
PBMC Ctrl 0min
GSM211106
MO_control_0min_Patient6
PBMC Ctrl 0min
GSM211107
MO_control_0min_Patient7
PBMC Ctrl 0min
GSM211108
MO_control_0min_Patient8
PBMC Ctrl 0min
GSM211109
MO_control_0min_Patient9
PBMC Ctrl 0min
GSM211110
MO_control_0min_Patient10
PBMC Ctrl 0min
GSM211111
MO_control_0min_Patient12
PBMC Ctrl 0min
GSM211112
MO_control_0min_Patient13
PBMC Ctrl 0min
GSM211113
MO_control_0min_Patient14
PBMC Ctrl 0min
GSM211114
MO_control_0min_Patient15
PBMC Ctrl 0min
GSM211115
MO_control_0min_Patient16
PBMC Ctrl 0min
GSM211116
MO_control_0min_Patient17
PBMC Ctrl 0min
GSM211117
MO_control_0min_Patient18
PBMC Ctrl 0min
GSM211118
MO_LB_180min_Patient1
PBMC LB 180min
GSM211119
MO_LB_180min_Patient2
PBMC LB 180min
GSM211120
MO_LB_180min_Patient3
PBMC LB 180min
GSM211121
MO_LB_180min_Patient4
PBMC LB 180min
GSM211122
MO_LB_180min_Patient5
PBMC LB 180min
GSM211123
MO_LB_180min_Patient6
PBMC LB 180min
GSM211124
MO_LB_180min_Patient7
PBMC LB 180min
GSM211125
MO_LB_180min_Patient8
PBMC LB 180min
GSM211126
MO_LB_180min_Patient9
PBMC LB 180min
GSM211127
MO_LB_180min_Patient10
PBMC LB 180min
GSM211128
MO_LB_180min_Patient12
PBMC LB 180min
GSM211129
MO_LB_180min_Patient13
PBMC LB 180min
GSM211130
MO_LB_180min_Patient14
PBMC LB 180min
GSM211131
MO_LB_180min_Patient15
PBMC LB 180min
GSM211132
MO_LB_180min_Patient16
PBMC LB 180min
GSM211133
MO_LB_180min_Patient17
PBMC LB 180min
GSM211134
MO_LB_180min_Patient18
PBMC LB 180min
GSM211135
MO_control_180min_Patient1
PBMC Ctrl 180min
GSM211136
MO_control_180min_Patient2
PBMC Ctrl 180min
GSM211137
MO_control_180min_Patient3
PBMC Ctrl 180min
GSM211138
MO_control_180min_Patient4
PBMC Ctrl 180min
GSM211139
MO_control_180min_Patient5
PBMC Ctrl 180min
GSM211140
MO_control_180min_Patient6
PBMC Ctrl 180min
GSM211141
MO_control_180min_Patient7
PBMC Ctrl 180min
GSM211142
MO_control_180min_Patient8
PBMC Ctrl 180min
GSM211143
MO_control_180min_Patient9
PBMC Ctrl 180min
GSM211144
MO_control_180min_Patient10
PBMC Ctrl 180min
GSM211145
MO_control_180min_Patient12
PBMC Ctrl 180min
GSM211146
MO_control_180min_Patient13
PBMC Ctrl 180min
GSM211147
MO_control_180min_Patient14
PBMC Ctrl 180min
GSM211148
MO_control_180min_Patient15
PBMC Ctrl 180min
GSM211149
MO_control_180min_Patient16
PBMC Ctrl 180min
GSM211150
MO_control_180min_Patient17
PBMC Ctrl 180min
GSM211151
MO_control_180min_Patient18
PBMC Ctrl 180min

Group Sets View in Gene Expression Browser

Name  
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PBMC Default  View
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Module Analysis

Group Set  
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PBMC
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