Dataset with samples from Individuals with defects in Intrinsic and Innate Immunity:
1)- Herpes simplex encephalitis (HSE):
- TLR3 deficiency, Phenotype OMIM number 613002
- TRIF deficiency, Phenotype OMIM number 614850
2)- TLR signaling pathway deficiency:
- MyD88 deficiency, Phenotype OMIM number 612260
We report here unrelated HSE patients with autosomal recessive (AR) or autosomal dominant (AD) TRIF deficiency. The AR form of the disease is due to a homozygous nonsense mutation, resulting in a complete absence of the TRIF protein. Both the TLR3 and the TRIF-dependent TLR4 signaling pathways are abolished. The AD form of TRIF deficiency is due to a heterozygous missense mutation resulting in a dysfunctional protein. The TLR3 signaling pathway is impaired, whereas the TRIF-dependent TLR4 pathway is unaffected. Both patients however showed reduced capacity to respond to cytosolic double stranded RNA, consistent with recent reports of TRIF’s involvement in the DExD/H-box helicases pathway.
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Skin fibroblast cell lines were derived from healthy controls (n=3), patient with deficiencies for TRIF (n=1), MYD88 (n=1), and TLR3 (n=1) and cultured for 4 hours in the presence of IL1B (20ng/ml) or poly I:C (25ng/ml) or left unstimulated for the same length of time.PBMCs (previously frozen) collected from a healthy control (n=1) and patients with deficiencies for TRIF (n=1), and MYD88 (n=1) were cultured together with LPS (10ng/ml) or R848 (3ug/ml) for 2hrs or left unstimulated for the same length of time.
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Sample ID | !Sample Title | group | Cell type | treatment | concentration |
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GSM801667 | Fibroblasts C3 PIC | Fibroblasts Ctrl PIC | Fibroblasts | Poly I:C | 25ng/ml |
GSM801668 | Fibroblasts P1TRIF-/- IL1B | Fibroblasts AR TRIF IL1B | Fibroblasts | IL1B | 20ng/ml |
GSM801669 | Fibroblasts C1 IL1B | Fibroblasts Ctrl IL1B | Fibroblasts | IL1B | 20ng/ml |
GSM801670 | Fibroblasts C3 IL1B | Fibroblasts Ctrl IL1B | Fibroblasts | IL1B | 20ng/ml |
GSM801671 | Fibroblasts TLR3-/- NS | Fibroblasts AR TLR3 NS | Fibroblasts | Non stimulated |
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Sample ID | !Sample Title | Group | Cell type | Treatment | Concentration | Disease state | Time point |
---|---|---|---|---|---|---|---|
GSM801667 | Fibroblasts C3 PIC |
Fibroblasts Ctrl PIC |
Fibroblasts |
Poly I:C |
25ng/ml |
healthy control |
4hrs |
GSM801668 | Fibroblasts P1TRIF-/- IL1B |
Fibroblasts AR TRIF IL1B |
Fibroblasts |
IL1B |
20ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient |
4hrs |
GSM801669 | Fibroblasts C1 IL1B |
Fibroblasts Ctrl IL1B |
Fibroblasts |
IL1B |
20ng/ml |
healthy control |
4hrs |
GSM801670 | Fibroblasts C3 IL1B |
Fibroblasts Ctrl IL1B |
Fibroblasts |
IL1B |
20ng/ml |
healthy control |
4hrs |
GSM801671 | Fibroblasts TLR3-/- NS |
Fibroblasts AR TLR3 NS |
Fibroblasts |
Non stimulated |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TLR3 deficient patient |
4hrs |
|
GSM801672 | Fibroblasts MYD88-/- IL1B |
Fibroblasts AR MyD88 IL1B |
Fibroblasts |
IL1B |
20ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) MYD88 deficient patient |
4hrs |
GSM801673 | Fibroblasts MYD88-/- NS |
Fibroblasts AR MyD88 NS |
Fibroblasts |
NS |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) MYD88 deficient patient |
4hrs |
|
GSM801674 | Fibroblasts C1 PIC |
Fibroblasts Ctrl PIC |
Fibroblasts |
Poly I:C |
25ng/ml |
healthy control |
4hrs |
GSM801675 | Fibroblasts P1TRIF-/- NS |
Fibroblasts AR TRIF NS |
Fibroblasts |
Non stimulated |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient |
4hrs |
|
GSM801676 | Fibroblasts TLR3-/- IL1B |
Fibroblasts AR TLR3 IL1B |
Fibroblasts |
IL1B |
20ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TLR3 deficient patient |
4hrs |
GSM801677 | Fibroblasts C3 NS |
Fibroblasts Ctrl NS |
Fibroblasts |
Non stimulated |
healthy control |
4hrs |
|
GSM801678 | Fibroblasts C2 IL1B |
Fibroblasts Ctrl IL1B |
Fibroblasts |
IL1B |
20ng/ml |
healthy control |
4hrs |
GSM801679 | Fibroblasts TLR3 PIC |
Fibroblasts TLR3 PIC |
Fibroblasts |
Poly I:C |
25ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TLR3 deficient patient |
4hrs |
GSM801680 | Fibroblasts C2 NS |
Fibroblasts Ctrl NS |
Fibroblasts |
Non stimulated |
healthy control |
4hrs |
|
GSM801681 | Fibroblasts C1 NS |
Fibroblasts Ctrl NS |
Fibroblasts |
Non stimulated |
healthy control |
4hrs |
|
GSM801682 | Fibroblasts MYD88-/- PIC |
Fibroblasts AR MyD88 PIC |
Fibroblasts |
Poly I:C |
25ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) MYD88 deficient patient |
4hrs |
GSM801683 | Fibroblasts P1TRIF-/- PIC |
Fibroblasts AR TRIF PIC |
Fibroblasts |
Poly I:C |
25ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient |
4hrs |
GSM801684 | Fibroblasts C2-/- PIC |
Fibroblasts Ctrl PIC |
Fibroblasts |
Poly I:C |
25ng/ml |
healthy control |
4hrs |
GSM801685 | PBMC Ctrl LPS |
PBMC Ctrl LPS |
PBMC |
LPS |
10ng/ml |
healthy control |
2hrs |
GSM801686 | PBMC TRIF-/- LPS |
PBMC AR TRIFLPS |
PBMC |
LPS |
10ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient |
2hrs |
GSM801687 | PBMC MYD88-/- LPS |
PBMC AR MyD88 LPS |
PBMC |
LPS |
10ng/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) MYD88 deficient patient |
2hrs |
GSM801688 | PBMC Ctrl NS |
PBMC Ctrl NS |
PBMC |
Non stimulated |
healthy control |
2hrs |
|
GSM801689 | PBMC TRIF-/- NS |
PBMC AR TRIF NS |
PBMC |
Non stimulated |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient |
2hrs |
|
GSM801690 | PBMC MYD88-/- NS |
PBMC AR MyD88 NS |
PBMC |
Non stimulated |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) MYD88 deficient patient |
2hrs |
|
GSM801691 | PBMC Ctrl R848 |
PBMC Ctrl R848 |
PBMC |
R848 |
3ug/ml |
healthy control |
2hrs |
GSM801692 | PBMC TRIF-/- R848 |
PBMC AR TRIF R848 |
PBMC |
R848 |
3ug/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) TRIF deficient patient |
2hrs |
GSM801693 | PBMC MYD88-/- R848 |
PBMC AR MyD88 R848 |
PBMC |
R848 |
3ug/ml |
herpes simplex virus type 1 (HSV1) encephalitis (HSE) MYD88 deficient patient |
2hrs |
Name | ||
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