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Clinical

- Dataset with samples from Individuals with Congenital defects of phagocyte number, functions, or both:

1- Congenital neutropenia, P14/LAMTOR2 deficiency, Phenotype OMIM number 610798.

see PID classification: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659841/

see publication: https://www.ncbi.nlm.nih.gov/pubmed/24092934

Purpose

Lysosome-related organelles have versatile functions including protein and lipid degradation, signal transduction, and protein secretion. The molecular elucidation of rare congenital diseases affecting endosomal/lysosomal biogenesis has given insights into physiological functions of the innate and adaptive immune system.. Here, we describe a novel human primary immunodeficiency disorder and provide evidence that the endosomal adaptor protein p14, previously characterized as confining mitogen-activated-protein-kinase (MAPK) signaling to late endosomes, is critical for the function of neutrophils, B-cells, cytotoxic T-cells and melanocytes. Combining genetic linkage studies and transcriptional profiling analysis, we identified a homozygous point mutation in the 3’ UTR of p14 (also known as MAPBPIP), resulting in decreased protein expression. In p14-deficient cells, the distribution of late endosomes was severely perturbed, suggesting a novel role for p14 in endosomal biogenesis. These findings have implications for understanding endosomal membrane dynamics, compartmentalization of cell signal cascades, and their role in immunity. Keywords: Interindividual comparison.

Hypothesis

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Experimental Design

EBV-transformed B cell lines from 2 parents and 2 affected children

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Affymetrix HG-U133A
4 Samples Loaded: 4
Human (Homo sapiens)
B cells
P14/LAMTOR deficiency
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title tissue group Genetic modification
GSM146336 child #12 B-cells child 12 TRUE
GSM146337 Father #1 B-cells Father 1 TRUE
GSM146338 child #13 B-cells child 13 TRUE
GSM146339 Mother #2 B-cells Mother 2 TRUE
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File
sampleset4000028_sampleannotations_Group.csv
Sample Set Spreadsheet
sampleset4000028_sampleannotations_Group.csv
Sample Set Spreadsheet
sampleset4000028_sampleannotations_Group.csv
Sample Set Spreadsheet
Raw Signal
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Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Tissue Group Genetic modification
GSM146336
child #12
B-cells
child 12
TRUE
GSM146337
Father #1
B-cells
Father 1
TRUE
GSM146338
child #13
B-cells
child 13
TRUE
GSM146339
Mother #2
B-cells
Mother 2
TRUE

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